Photo by Thomas Kelley on Unsplash
Here is a list of the main publications from me and the lab. For a more detailed list, please check my Google scholar
Calviello L & Venkataramanan S, Rogowski KJ, Wiler E, Wilkins K, Tejura M, Thai B, Krol J, Filipowicz W, Landthaler M, Floor SN. DDX3 depletion represses translation of mRNAs with complex 5′UTRs , Nucleic Acid Research, 2021
Calviello L, Hirsekorn A, Ohler U. Quantifcation of translation uncovers the functions of the alternative transcriptome , Nature Structural & Molecular Biology, 2020
Chong C, Müller M, Pak H, Harnett D, Huber F, Grun D, Leleu M, Auger A, Arnaud M, Stevenson JB, Michaux J, Bilic I, Hirsekorn A, Calviello L, Simó-Riudalbas L, Planet E, Lubiński J, Bryśkiewicz M, Wiznerowicz M, Xenarios I, Zhang L, Trono D, Harari A, Ohler U, Coukos G, Bassani-Sternberg M. Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes , Nature Communications, 2020
van Heesch S, Witte F, Schneider-Lunitz V, F Schulz J, Adami E, B Faber A, Kirchner M, Maatz H, Blachut S, Sandmann C, Kanda M, L Worth C, Schafer S, Calviello L, Merriott R, Patone G, Hummel O, Wyler E, Obermayer B, B Mücke M, Lindberg EL, Trnka F, Memczak S, Schilling M, Felkin EL, Barton PJR, Quaife NM, Vanezis K, Diecke S, Mukai M, Mah N, Oh S, Kurtz A, Schramm C, Schwinge D, Sebode M, Harakalova M, Asselbergs FW, Vink A, de Weger RA, Viswanathan S, Widjaja AA, Gärtner-Rommel A, Milting H, Dos Remedios C, Knosalla C, Mertins P, Landthaler M, Vingron M, Linke AW, Seidman GJ, Seidman EC, Rajewsky N, Ohler U, A Cook S, Hubner N. The Translational Landscape of the Human Heart Cell, 2019
Calviello L, Sydow D, Harnett D, Ohler U. Ribo-seQC: comprehensive analysis of cytoplasmic and organellar ribosome profiling data , bioRxiv, 2019
Zappulo A, Van Den Bruck D, Ciolli Mattioli C, Franke V, Imami K, McShane E, Moreno-Estelles M, Calviello L, Filipchyk A, Peguero-Sanchez E, Müller T, Woehler A, Birchmeier C, Merino E, Rajewsky N, Ohler U, Mazzoni OE, Selbach M, Akalin A, Chekulaeva M. RNA localization is a key determinant of neurite-enriched proteome , Nature Communications, 2017
Calviello L, Ohler U. Beyond Read-Counts: Ribo-seq Data Analysis to Understand the Functions of the Transcriptome , Trends in Genetics, 2017
Mukherjee N, Calviello L, Hirsekorn A, de Pretis S, Pelizzola M, Ohler U. Integrative classification of human coding and noncoding genes through RNA metabolism profiles , Nature Structural & Molecular Biology, 2016
Hsu PY, Calviello L, Larry Wu HY, Li FW, Rothfels CJ, Ohler U, Benfey PN. Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis , PNAS, 2016
Calviello L, Mukherjee N, Wyler E, Zauber H, Hirsekorn A, Selbach M, Landthaler M, Obermayer B, Ohler U. Detecting actively translated open reading frames in ribosome profiling data , Nature Methods, 2015
Mackoviak S, Zauber H, Bielow C, Thiel D, Kutz K, Calviello L, Mastrobuoni G, Rajewsky N, Kempa S, Selbach M, Obermayer B. Extensive identification and analysis of conserved small ORFs in animals , Genome Biology, 2014
Calviello L, Stano P, Mavelli F, Luisi PL, Marangoni M. Quasi-cellular systems: stochastic simulation analysis at nanoscale range , BMC Bioinformatics, 2013